table bigPsl "bigPsl pairwise alignment" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name or ID of item, ideally both human readable and unique" uint score; "Score (0-1000)" char[1] strand; "+ or - indicates whether the query aligns to the + or - strand on the reference" uint thickStart; "Start of where display should be thick (start codon)" uint thickEnd; "End of where display should be thick (stop codon)" uint reserved; "RGB value (use R,G,B string in input file)" int blockCount; "Number of blocks" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" uint oChromStart;"Start position in other chromosome" uint oChromEnd; "End position in other chromosome" char[1] oStrand; "+ or -, - means that psl was reversed into BED-compatible coordinates" uint oChromSize; "Size of other chromosome." int[blockCount] oChromStarts; "Start positions relative to oChromStart or from oChromStart+oChromSize depending on strand" lstring oSequence; "Sequence on other chrom (or empty)" string oCDS; "CDS in NCBI format" uint chromSize;"Size of target chromosome" uint match; "Number of bases matched." uint misMatch; " Number of bases that don't match " uint repMatch; " Number of bases that match but are part of repeats " uint nCount; " Number of 'N' bases " uint seqType; "0=empty, 1=nucleotide, 2=amino_acid" )